Detailed information of SNP:
|
SNP ID:
sf0500173356(Gbrowse)
Chromosome: chr05 Position: 173356 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 83.10% | 16.90% |
| All Indica | 795 | 76.60% | 23.40% |
| All Japonica | 496 | 95.36% | 4.64% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 80.27% | 19.73% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 207 | 68.60% | 31.40% |
| Temperate Japonica | 334 | 93.71% | 6.29% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500173356 | C->T | INTERGENIC | None |