Detailed information of SNP:
|
SNP ID:
sf0500179859(Gbrowse)
Chromosome: chr05 Position: 179859 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 53.43% | 46.57% |
| All Indica | 797 | 27.73% | 72.27% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 374 | 20.32% | 79.68% |
| Indica II | 212 | 25.47% | 74.53% |
| Indica Intermediate | 211 | 43.13% | 56.87% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500179859 | T->G | LOC_Os05g01256(LOC_Os05g01256.1) | INTRON |
| sf0500179859 | T->G | LOC_Os05g01256(LOC_Os05g01256.2) | INTRON |