Detailed information of SNP:
|
SNP ID:
sf0500197693(Gbrowse)
Chromosome: chr05 Position: 197693 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 93.22% | 6.78% |
| All Indica | 798 | 91.35% | 8.65% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 60.94% | 39.06% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500197693 | A->G | INTERGENIC | None |