Detailed information of SNP:
|
SNP ID:
sf0500201539(Gbrowse)
Chromosome: chr05 Position: 201539 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 95.84% | 4.16% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500201539 | T->C | LOC_Os05g01310(LOC_Os05g01310.2) | UTR_5_PRIME |
| sf0500201539 | T->C | LOC_Os05g01310(LOC_Os05g01310.1) | UTR_5_PRIME |
| sf0500201539 | T->C | LOC_Os05g01310(LOC_Os05g01310.3) | UTR_5_PRIME |