Detailed information of SNP:
|
SNP ID:
sf0500206143(Gbrowse)
Chromosome: chr05 Position: 206143 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 52.19% | 47.81% |
| All Indica | 797 | 25.35% | 74.65% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 21.87% | 78.13% |
| Indica II | 212 | 17.92% | 82.08% |
| Indica Intermediate | 210 | 39.05% | 60.95% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500206143 | C->T | INTERGENIC | None |