Detailed information of SNP:
|
SNP ID:
sf0500210699(Gbrowse)
Chromosome: chr05 Position: 210699 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 53.55% | 46.45% |
| All Indica | 777 | 82.63% | 17.37% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 368 | 82.88% | 17.12% |
| Indica II | 207 | 85.99% | 14.01% |
| Indica Intermediate | 202 | 78.71% | 21.29% |
| Temperate Japonica | 335 | 6.27% | 93.73% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500210699 | C->T | INTERGENIC | None |