Detailed information of SNP:
|
SNP ID:
sf0500210720(Gbrowse)
Chromosome: chr05 Position: 210720 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 52.57% | 47.43% |
| All Indica | 766 | 24.93% | 75.07% |
| All Japonica | 495 | 95.56% | 4.44% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 365 | 24.11% | 75.89% |
| Indica II | 210 | 17.14% | 82.86% |
| Indica Intermediate | 191 | 35.08% | 64.92% |
| Temperate Japonica | 333 | 93.69% | 6.31% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500210720 | G->A | INTERGENIC | None |