Detailed information of SNP:
|
SNP ID:
sf0500210918(Gbrowse)
Chromosome: chr05 Position: 210918 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 92.08% | 7.92% |
| All Indica | 799 | 89.36% | 10.64% |
| All Japonica | 494 | 96.96% | 3.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 333 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500210918 | G->T | INTERGENIC | None |