Detailed information of SNP:
|
SNP ID:
sf0500246375(Gbrowse)
Chromosome: chr05 Position: 246375 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 87.74% | 12.26% |
| All Indica | 799 | 83.48% | 16.52% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500246375 | T->C | LOC_Os05g01420(LOC_Os05g01420.1) | Non-Synonymous SNP |