Detailed information of SNP:
|
SNP ID:
sf0500262933(Gbrowse)
Chromosome: chr05 Position: 262933 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 94.63% | 5.37% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 30.77% | 69.23% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500262933 | G->A | INTERGENIC | None |