Detailed information of SNP:
|
SNP ID:
sf0500274972(Gbrowse)
Chromosome: chr05 Position: 274972 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 89.54% | 10.46% |
| All Indica | 798 | 90.23% | 9.77% |
| All Japonica | 494 | 89.07% | 10.93% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 88.77% | 11.23% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 52.75% | 47.25% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500274972 | G->A | LOC_Os05g01470(LOC_Os05g01470.3) | INTRON |
| sf0500274972 | G->A | LOC_Os05g01470(LOC_Os05g01470.1) | INTRON |