Detailed information of SNP:
|
SNP ID:
sf0500279211(Gbrowse)
Chromosome: chr05 Position: 279211 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1329 | 64.94% | 35.06% |
| All Indica | 725 | 42.48% | 57.52% |
| All Japonica | 492 | 96.54% | 3.46% |
| Aus | 57 | 68.42% | 31.58% |
| Indica I | 315 | 29.21% | 70.79% |
| Indica II | 208 | 55.77% | 44.23% |
| Indica Intermediate | 202 | 49.50% | 50.50% |
| Temperate Japonica | 331 | 94.86% | 5.14% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500279211 | C->T | INTERGENIC | None |