Detailed information of SNP:
|
SNP ID:
sf0500282600(Gbrowse)
Chromosome: chr05 Position: 282600 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 54.61% | 45.39% |
| All Indica | 795 | 86.29% | 13.71% |
| All Japonica | 495 | 4.24% | 95.76% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 207 | 86.96% | 13.04% |
| Temperate Japonica | 333 | 6.01% | 93.99% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500282600 | G->A | INTERGENIC | None |