Detailed information of SNP:
|
SNP ID:
sf0500284719(Gbrowse)
Chromosome: chr05 Position: 284719 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 51.23% | 48.77% |
| All Indica | 799 | 78.60% | 21.40% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500284719 | C->T | INTERGENIC | None |