Detailed information of SNP:
|
SNP ID:
sf0500284833(Gbrowse)
Chromosome: chr05 Position: 284833 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1247 | 57.82% | 42.18% |
| All Indica | 658 | 26.75% | 73.25% |
| All Japonica | 496 | 95.77% | 4.23% |
| Aus | 40 | 77.50% | 22.50% |
| Indica I | 334 | 15.27% | 84.73% |
| Indica II | 176 | 46.59% | 53.41% |
| Indica Intermediate | 148 | 29.05% | 70.95% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500284833 | T->G | INTERGENIC | None |