Detailed information of SNP:
|
SNP ID:
sf0500304693(Gbrowse)
Chromosome: chr05 Position: 304693 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 82.93% | 17.07% |
| All Indica | 798 | 77.44% | 22.56% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 210 | 67.62% | 32.38% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500304693 | A->C | LOC_Os05g01520(LOC_Os05g01520.1) | INTRON |