Detailed information of SNP:
|
SNP ID:
sf0500316114(Gbrowse)
Chromosome: chr05 Position: 316114 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 60.34% | 39.66% |
| All Indica | 793 | 34.93% | 65.07% |
| All Japonica | 496 | 95.77% | 4.23% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 20.80% | 79.20% |
| Indica II | 213 | 51.64% | 48.36% |
| Indica Intermediate | 205 | 43.41% | 56.59% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500316114 | T->C | INTERGENIC | None |