Detailed information of SNP:
|
SNP ID:
sf0500328316(Gbrowse)
Chromosome: chr05 Position: 328316 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 58.33% | 41.67% |
| All Indica | 796 | 33.42% | 66.58% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 20.59% | 79.41% |
| Indica II | 212 | 49.06% | 50.94% |
| Indica Intermediate | 210 | 40.48% | 59.52% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500328316 | T->C | INTERGENIC | None |