Detailed information of SNP:
|
SNP ID:
sf0500333113(Gbrowse)
Chromosome: chr05 Position: 333113 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 60.55% | 39.45% |
| All Indica | 797 | 89.96% | 10.04% |
| All Japonica | 497 | 7.24% | 92.76% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 87.13% | 12.87% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500333113 | C->T | INTERGENIC | None |