Detailed information of SNP:
|
SNP ID:
sf0500335511(Gbrowse)
Chromosome: chr05 Position: 335511 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 65.30% | 34.70% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 493 | 24.54% | 75.46% |
| Aus | 66 | 63.64% | 36.36% |
| Indica I | 374 | 86.90% | 13.10% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 333 | 22.52% | 77.48% |
| Tropical Japonica | 92 | 39.13% | 60.87% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500335511 | G->A | INTERGENIC | None |