Detailed information of SNP:
|
SNP ID:
sf0500358908(Gbrowse)
Chromosome: chr05 Position: 358908 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 54.13% | 45.87% |
| All Indica | 798 | 25.69% | 74.31% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 28.00% | 72.00% |
| Indica II | 212 | 17.45% | 82.55% |
| Indica Intermediate | 211 | 29.86% | 70.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500358908 | G->C | INTERGENIC | None |