Detailed information of SNP:
|
SNP ID:
sf0500370570(Gbrowse)
Chromosome: chr05 Position: 370570 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 78.70% | 21.30% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 496 | 50.40% | 49.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 32.93% | 67.07% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500370570 | A->G | LOC_Os05g01620(LOC_Os05g01620.1) | INTRON |