Detailed information of SNP:
|
SNP ID:
sf0500436456(Gbrowse)
Chromosome: chr05 Position: 436456 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 91.38% | 8.62% |
| All Indica | 795 | 88.55% | 11.45% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 85.48% | 14.52% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500436456 | T->A | INTERGENIC | None |