Detailed information of SNP:
|
SNP ID:
sf0500436518(Gbrowse)
Chromosome: chr05 Position: 436518 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 88.64% | 11.36% |
| All Indica | 797 | 87.70% | 12.30% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 373 | 85.25% | 14.75% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500436518 | G->A | INTERGENIC | None |