Detailed information of SNP:
|
SNP ID:
sf0500444514(Gbrowse)
Chromosome: chr05 Position: 444514 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1376 | 89.90% | 10.10% |
| All Indica | 771 | 87.03% | 12.97% |
| All Japonica | 489 | 93.46% | 6.54% |
| Aus | 62 | 93.55% | 6.45% |
| Indica I | 370 | 84.32% | 15.68% |
| Indica II | 198 | 99.49% | 0.51% |
| Indica Intermediate | 203 | 79.80% | 20.20% |
| Temperate Japonica | 331 | 90.63% | 9.37% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500444514 | G->C | INTERGENIC | None |