Detailed information of SNP:
|
SNP ID:
sf0500526354(Gbrowse)
Chromosome: chr05 Position: 526354 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 79.70% | 20.30% |
| All Indica | 795 | 76.48% | 23.52% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 78.40% | 21.60% |
| Indica II | 210 | 85.24% | 14.76% |
| Indica Intermediate | 210 | 64.29% | 35.71% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500526354 | T->C | INTERGENIC | None |