Detailed information of SNP:
|
SNP ID:
sf0500532294(Gbrowse)
Chromosome: chr05 Position: 532294 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 58.79% | 41.21% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 7.76% | 92.24% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500532294 | C->T | INTERGENIC | None |