Detailed information of SNP:
|
SNP ID:
sf0500532312(Gbrowse)
Chromosome: chr05 Position: 532312 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 60.88% | 39.12% |
| All Indica | 799 | 91.24% | 8.76% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 84.27% | 15.73% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 7.76% | 92.24% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500532312 | T->C | INTERGENIC | None |