Detailed information of SNP:
|
SNP ID:
sf0500533542(Gbrowse)
Chromosome: chr05 Position: 533542 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 91.46% | 8.54% |
| All Indica | 798 | 89.35% | 10.65% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 85.83% | 14.17% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500533542 | C->T | INTERGENIC | None |