Detailed information of SNP:
|
SNP ID:
sf0500558142(Gbrowse)
Chromosome: chr05 Position: 558142 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 61.92% | 38.08% |
| All Indica | 798 | 96.37% | 3.63% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500558142 | A->G | LOC_Os05g01970(LOC_Os05g01970.1) | INTRON |
| sf0500558142 | A->G | LOC_Os05g01970(LOC_Os05g01970.2) | INTRON |
| sf0500558142 | A->G | LOC_Os05g01970(LOC_Os05g01970.3) | INTRON |
| sf0500558142 | A->G | LOC_Os05g01970(LOC_Os05g01970.4) | INTRON |