Detailed information of SNP:
|
SNP ID:
sf0500562650(Gbrowse)
Chromosome: chr05 Position: 562650 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 52.65% | 47.35% |
| All Indica | 798 | 80.08% | 19.92% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 48.58% | 51.42% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500562650 | G->A | INTERGENIC | None |