Detailed information of SNP:
|
SNP ID:
sf0500580717(Gbrowse)
Chromosome: chr05 Position: 580717 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 60.24% | 39.76% |
| All Indica | 794 | 70.65% | 29.35% |
| All Japonica | 496 | 36.69% | 63.31% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 371 | 62.26% | 37.74% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 334 | 15.87% | 84.13% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500580717 | A->G | INTERGENIC | None |