Detailed information of SNP:
|
SNP ID:
sf0500588944(Gbrowse)
Chromosome: chr05 Position: 588944 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 54.83% | 45.17% |
| All Indica | 799 | 25.16% | 74.84% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 4.53% | 95.47% |
| Indica II | 213 | 54.93% | 45.07% |
| Indica Intermediate | 211 | 31.75% | 68.25% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500588944 | C->T | INTERGENIC | None |