Detailed information of SNP:
|
SNP ID:
sf0500589004(Gbrowse)
Chromosome: chr05 Position: 589004 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 65.59% | 34.41% |
| All Indica | 799 | 47.18% | 52.82% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 36.80% | 63.20% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 211 | 54.03% | 45.97% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500589004 | C->T | INTERGENIC | None |