Detailed information of SNP:
|
SNP ID:
sf0500645272(Gbrowse)
Chromosome: chr05 Position: 645272 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 76.98% | 23.02% |
| All Indica | 796 | 69.97% | 30.03% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 372 | 77.96% | 22.04% |
| Indica II | 213 | 48.36% | 51.64% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500645272 | G->A | INTERGENIC | None |