Detailed information of SNP:
|
SNP ID:
sf0500663400(Gbrowse)
Chromosome: chr05 Position: 663400 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 74.88% | 25.12% |
| All Indica | 797 | 68.63% | 31.37% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 74.93% | 25.07% |
| Indica II | 211 | 64.93% | 35.07% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500663400 | T->C | INTERGENIC | None |