Detailed information of SNP:
|
SNP ID:
sf0500663880(Gbrowse)
Chromosome: chr05 Position: 663880 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 79.41% | 20.59% |
| All Indica | 793 | 71.25% | 28.75% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 76.53% | 23.47% |
| Indica II | 209 | 66.99% | 33.01% |
| Indica Intermediate | 209 | 66.03% | 33.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500663880 | T->C | INTERGENIC | None |