Detailed information of SNP:
|
SNP ID:
sf0500670256(Gbrowse)
Chromosome: chr05 Position: 670256 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 58.66% | 41.34% |
| All Indica | 797 | 32.75% | 67.25% |
| All Japonica | 495 | 95.15% | 4.85% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 25.07% | 74.93% |
| Indica II | 213 | 39.91% | 60.09% |
| Indica Intermediate | 209 | 39.23% | 60.77% |
| Temperate Japonica | 333 | 92.79% | 7.21% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500670256 | C->G | INTERGENIC | None |