Detailed information of SNP:
|
SNP ID:
sf0500706163(Gbrowse)
Chromosome: chr05 Position: 706163 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.64% | 44.36% |
| All Indica | 799 | 86.61% | 13.39% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 7.76% | 92.24% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500706163 | G->T | INTERGENIC | None |