Detailed information of SNP:
|
SNP ID:
sf0500723383(Gbrowse)
Chromosome: chr05 Position: 723383 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1352 | 95.86% | 4.14% |
| All Indica | 748 | 96.39% | 3.61% |
| All Japonica | 493 | 96.96% | 3.04% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 186 | 90.32% | 9.68% |
| Indica Intermediate | 189 | 95.24% | 4.76% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 8 | 50.00% | 50.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500723383 | T->G | INTERGENIC | None |