Detailed information of SNP:
|
SNP ID:
sf0500728234(Gbrowse)
Chromosome: chr05 Position: 728234 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 61.85% | 38.15% |
| All Indica | 794 | 93.32% | 6.68% |
| All Japonica | 497 | 7.44% | 92.56% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 86.79% | 13.21% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500728234 | A->G | LOC_Os05g02270(LOC_Os05g02270.1) | Non-Synonymous SNP |