Detailed information of SNP:
|
SNP ID:
sf0500736167(Gbrowse)
Chromosome: chr05 Position: 736167 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 58.59% | 41.41% |
| All Indica | 791 | 89.76% | 10.24% |
| All Japonica | 496 | 7.66% | 92.34% |
| Aus | 63 | 68.25% | 31.75% |
| Indica I | 372 | 94.89% | 5.11% |
| Indica II | 211 | 87.68% | 12.32% |
| Indica Intermediate | 208 | 82.69% | 17.31% |
| Temperate Japonica | 334 | 7.49% | 92.51% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500736167 | G->A | INTERGENIC | None |