Detailed information of SNP:
|
SNP ID:
sf0500738633(Gbrowse)
Chromosome: chr05 Position: 738633 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 88.90% | 11.10% |
| All Indica | 795 | 86.42% | 13.58% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 211 | 71.09% | 28.91% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500738633 | A->C | LOC_Os05g02300(LOC_Os05g02300.1) | Synonymous |