Detailed information of SNP:
|
SNP ID:
sf0500745591(Gbrowse)
Chromosome: chr05 Position: 745591 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.12% | 44.88% |
| All Indica | 797 | 84.57% | 15.43% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 212 | 66.51% | 33.49% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 6.27% | 93.73% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500745591 | G->A | INTERGENIC | None |