Detailed information of SNP:



SNP ID: sf0500745591(Gbrowse)

Chromosome: chr05

Position: 745591
Major allele: A

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1417 55.12% 44.88%
All Indica797 84.57% 15.43%
All Japonica497 4.83% 95.17%
Aus67 83.58% 16.42%
Indica I374 98.13% 1.87%
Indica II212 66.51% 33.49%
Indica Intermediate211 78.67% 21.33%
Temperate Japonica335 6.27% 93.73%
Tropical Japonica94 1.06% 98.94%
Japonica Intermediate68 2.94% 97.06%
Group VI/Aromatic14 28.57% 71.43%
Intermediate42 54.76% 45.24%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0500745591 G->A INTERGENIC None