Detailed information of SNP:
|
SNP ID:
sf0500759356(Gbrowse)
Chromosome: chr05 Position: 759356 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 88.87% | 11.13% |
| All Indica | 799 | 85.48% | 14.52% |
| All Japonica | 496 | 95.36% | 4.64% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 8 | 62.50% | 37.50% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500759356 | G->A | LOC_Os05g02350(LOC_Os05g02350.1) | INTRON |