Detailed information of SNP:
|
SNP ID:
sf0500776359(Gbrowse)
Chromosome: chr05 Position: 776359 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 82.29% | 17.71% |
| All Indica | 797 | 71.14% | 28.86% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 71.39% | 28.61% |
| Indica II | 212 | 65.09% | 34.91% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500776359 | A->G | INTERGENIC | None |