Detailed information of SNP:
|
SNP ID:
sf0500793541(Gbrowse)
Chromosome: chr05 Position: 793541 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 80.37% | 19.63% |
| All Indica | 796 | 69.72% | 30.28% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 72.12% | 27.88% |
| Indica II | 212 | 61.32% | 38.68% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500793541 | T->C | LOC_Os05g02410(LOC_Os05g02410.1) | INTRON |