Detailed information of SNP:
|
SNP ID:
sf0500806178(Gbrowse)
Chromosome: chr05 Position: 806178 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 90.47% | 9.53% |
| All Indica | 799 | 92.37% | 7.63% |
| All Japonica | 496 | 95.56% | 4.44% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500806178 | A->T | INTERGENIC | None |