Detailed information of SNP:
|
SNP ID:
sf0500806364(Gbrowse)
Chromosome: chr05 Position: 806364 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 63.77% | 36.23% |
| All Indica | 760 | 97.37% | 2.63% |
| All Japonica | 477 | 5.66% | 94.34% |
| Aus | 50 | 94.00% | 6.00% |
| Indica I | 356 | 99.44% | 0.56% |
| Indica II | 205 | 95.61% | 4.39% |
| Indica Intermediate | 199 | 95.48% | 4.52% |
| Temperate Japonica | 316 | 6.01% | 93.99% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 36 | 72.22% | 27.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500806364 | T->G | INTERGENIC | None |