Detailed information of SNP:
|
SNP ID:
sf0500814808(Gbrowse)
Chromosome: chr05 Position: 814808 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 60.47% | 39.53% |
| All Indica | 799 | 66.33% | 33.67% |
| All Japonica | 497 | 51.31% | 48.69% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 69.87% | 30.13% |
| Indica II | 213 | 53.99% | 46.01% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 70.15% | 29.85% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0500814808 | T->C | INTERGENIC | None |